Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ActIIIShort-chain alcohol dehydrogenase. (270 aa)    
Predicted Functional Partners:
YcdF_2
Dehydrogenase.
 
  
 0.710
FabG_7
3-oxoacyl-[acyl-carrier-protein] reductase.
 
  
 0.709
CpnA_1
Short-chain dehydrogenase/reductase SDR.
 
  
 0.701
FabG_24
Short-chain dehydrogenase/reductase SDR.
 
  
 0.676
FabG_33
Short-chain dehydrogenase/reductase SDR.
 
  
 0.628
RMCT_3456
ATP-dependent helicase.
       0.620
FabG_15
Oxidoreductase.
 
  
 0.595
HdhA_2
Short chain dehydrogenase.
 
  
 0.554
RMCT_3458
Putative uncharacterized protein.
       0.549
RMCT_4317
Flavodoxin-like protein.
  
  
 0.533
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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