Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RMCT_3492Abortive infection protein. (255 aa)    
Predicted Functional Partners:
RMCT_3493
Membrane-bound protein lytR.
       0.768
MsrR_3
Transcriptional regulator.
       0.576
RMCT_3495
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
 
    0.564
pheA
Prephenate dehydratase.
       0.555
RMCT_1192
Dehydratase.
 
     0.545
RsmC
Methyltransferase small; Belongs to the methyltransferase superfamily.
 
   
 0.511
RMCT_3153
Antibiotic ABC transporter membrane protein.
  
  
 0.499
YebZ
Copper resistance D.
 
     0.482
RMCT_0934
ErfK/YbiS/YcfS/YnhG family protein.
     
 0.480
DrgA_1
Nitroreductase.
  
  
 0.478
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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