STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GudP_1Sugar phosphate permease. (408 aa)    
Predicted Functional Partners:
YcgM
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
  
    0.754
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
     
 0.713
FbpA_1
ABC transporter ferric iron-binding periplasmic protein.
  
  
 0.596
YbdK
Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
 
    0.521
RMCT_4559
Stage II sporulation protein E.
  
  
 0.501
Lip2_2
Esterase lipC.
     
 0.465
RMCT_1487
Cysteine dioxygenase type I.
 
     0.428
KdgR_3
Transcriptional regulator.
 
  
 0.425
AqpZ2
Glycerol uptake facilitator; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
  
 0.411
YbhB
Phosphatidylethanolamine-binding protein.
 
    0.406
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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