Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RMCT_3545DoxX family protein. (280 aa)    
Predicted Functional Partners:
CtpF_2
Metal cation transporter P-type ATPase ctpE.
  
  0.742
YloB_1
P-type HAD superfamily ATPase.
   
  0.696
YloB_2
P-type HAD superfamily ATPase.
   
  0.696
CtpF_1
ATPase, P-type (transporting), HAD superfamily, subfamily IC.
   
  0.696
QmcA_2
Membrane protease subunit, stomatin/prohibitin.
 
 
 0.578
RMCT_3546
Hypothetical repeat protein.
       0.525
QmcA_1
SPFH domain-containing protein/band 7 family protein.
   
 0.523
ArtM_2
ABC transporter ATP-binding protein.
 
  0.520
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
   
 
 0.508
RMCT_3155
Integral membrane protein.
  
  
 0.505
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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