Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCT_3571Putative uncharacterized protein. (160 aa)    
Predicted Functional Partners:
RMCT_3570
arsR family transcriptional regulator.
 
  
 0.933
RMCT_3569
Putative uncharacterized protein.
       0.645
RMCT_3572
Methionine synthase, vitamin-B12 independent.
       0.558
RMCT_3573
Protein LpqA.
       0.551
RMCT_2942
TetR family transcriptional regulator.
 
   
 0.498
RMCT_4098
Putative uncharacterized protein.
 
     0.488
RMCT_2943
Putative uncharacterized protein.
 
     0.472
RMCT_3376
Putative uncharacterized protein.
  
     0.471
RMCT_1975
DNA-binding domain-containing protein, AraC-type.
 
    0.455
ligA
NAD-dependent DNA ligase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
       0.443
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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