Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCT_3584Transferase. (245 aa)    
Predicted Functional Partners:
RMCT_3581
Type 11 methyltransferase.
 
   
 0.840
RMCT_0809
Hypothetical protein.
 
   
 0.812
RebM_2
Type 11 methyltransferase.
 
     0.795
RMCT_3583
Transferase.
 
  
 0.768
RMCT_3887
Polyketide cyclase/dehydrase and lipid transport.
  
     0.765
RMCT_3582
Glycoside hydrolase, family 57; Belongs to the glycosyl hydrolase 57 family.
  
   
 0.693
RMCT_0683
Conserved alanine rich protein.
 
  
 0.657
RMCT_3585
Pyrrolo-quinoline quinone.
       0.624
RMCT_0576
Putative uncharacterized protein.
  
     0.559
PpsA_2
Beta-ketoacyl synthase.
  
  
 0.523
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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