Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LysNGntR family transcriptional regulator. (446 aa)    
Predicted Functional Partners:
RMCT_3828
Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
    0.469
RMCT_0533
Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
 
     0.459
RmlB_1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.424
DapL
N-succinyldiaminopimelate aminotransferase.
 
 
 0.417
Mec
Mov34/MPN/PAD-1 family protein.
  
 
 0.414
RMCT_1975
DNA-binding domain-containing protein, AraC-type.
 
  
 0.402
RMCT_4178
Major facilitator superfamily MFS_1.
 
   
 0.401
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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