Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_3609Transcriptional regulator. (224 aa)    
Predicted Functional Partners:
RMCT_3610
SAM-dependent methyltransferase.
 
     0.783
RMCT_3611
Putative uncharacterized protein.
       0.741
RMCT_3608
Putative uncharacterized protein.
  
    0.721
RMCT_3607
Putative uncharacterized protein.
       0.591
RMCT_0152
Putative uncharacterized protein.
  
     0.585
RMCT_1169
Putative uncharacterized protein.
  
     0.560
RMCT_0818
protein-S-isoprenylcysteine methyltransferase.
  
     0.518
RMCT_1568
TetR family transcriptional regulator.
   
  
 0.483
RMCT_1165
Twin-arginine translocation pathway signal.
 
     0.481
PhnF
Transcriptional regulatory protein.
   
  
 0.469
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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