Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_3704TetR family transcriptional regulator. (213 aa)    
Predicted Functional Partners:
RMCT_3705
Amidohydrolase 2.
 
     0.875
RMCT_2241
Amidohydrolase.
 
     0.762
RMCT_0194
Aminoglycoside phosphotransferase.
 
     0.747
RMCT_3706
acyl-CoA dehydrogenase.
 
     0.742
MhpC
Alpha/beta hydrolase.
 
     0.739
DapA_1
Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
 
   
 0.739
RMCT_0990
Thioesterase.
 
     0.738
KstR2_7
Transcriptional regulator.
  
     0.734
RMCT_0952
Amidohydrolase 2.
 
     0.727
RMCT_2150
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
     0.725
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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