STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BphC3_2Putative biphenyl-2,3-diol 1,2-dioxygenase III. (160 aa)    
Predicted Functional Partners:
TcmG
Putative monooxygenase.
 
   
 0.899
RMCT_3725
Putative uncharacterized protein; Belongs to the UPF0312 family.
       0.769
RMCT_3724
Fumarylacetoacetate hydrolase family protein.
     
 0.692
RMCT_0327
Tetratricopeptide repeat protein.
 
     0.672
TfdB
Aromatic ring hydroxylase.
 
   
 0.648
RMCT_0194
Aminoglycoside phosphotransferase.
 
   
 0.483
RMCT_1332
Putative uncharacterized protein.
 
  
 0.478
RMCT_1034
acyl-CoA dehydrogenase.
  
  
 0.466
RelA_2
GTP pyrophosphokinase relA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.458
RMCT_4300
Metallophosphoesterase.
 
     0.415
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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