Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SigCRNA polymerase sigma factor sigC; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)    
Predicted Functional Partners:
RMCT_3756
Putative uncharacterized protein.
 
 0.966
CnrH
ECF subfamily RNA polymerase sigma-24 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.833
SigE
ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.725
YebZ
Copper resistance D.
     
 0.573
SigB
RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family.
     
 0.572
RMCT_3754
Putative uncharacterized protein.
       0.563
RMCT_2330
Anti-sigma factor.
  
 
 0.562
RpoE_4
RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
0.537
RMCT_2837
RNA polymerase sigma-70 factor.
  
 
 0.518
RpoE_2
Alternative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
0.506
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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