STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_3756Putative uncharacterized protein. (255 aa)    
Predicted Functional Partners:
SigC
RNA polymerase sigma factor sigC; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.969
RMCT_3929
Dihydroorotate dehydrogenase.
  
     0.716
RMCT_4284
Putative uncharacterized protein.
  
     0.673
RMCT_0899
Protein of unknown function.
 
     0.650
LpqM
Lipoprotein peptidase.
  
     0.549
RMCT_2187
LpqM.
  
     0.545
LppW
Lipoprotein lppW.
 
    0.521
RMCT_4364
Hypothetical protein.
  
     0.521
RMCT_1172
Beta-lactamase.
  
     0.520
RMCT_4341
Putative uncharacterized protein.
  
     0.513
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.