Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_3792Membrane protein mmpS5. (143 aa)    
Predicted Functional Partners:
MmpL8_2
Transporter.
  
 
 0.873
RMCT_3790
Protein of unknown function.
       0.777
RMCT_3789
Protein of unknown function.
     
 0.748
MmpL8_5
MMPL domain-containing protein.
   
 
 0.456
MmpL8_4
Transmembrane transport protein MmpL.
   
 
 0.456
MmpL8_6
Membrane protein mmpL4.
   
 
 0.456
MmpL4b
Membrane protein mmpL4.
   
 
 0.456
MmpL3
Transmembrane transport protein mmpL3.
   
 
 0.456
MmpL8_1
Transmembrane transport protein mmpL11.
   
 
 0.456
YdgH_2
MMPL domain-containing protein.
   
 
 0.456
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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