STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_3828Hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. (378 aa)    
Predicted Functional Partners:
RMCT_3830
Bifunctional RNase H/acid phosphatase.
  
  
 0.988
RMCT_3829
Zn-ribbon protein, possibly nucleic acid-binding protein.
  
  
 0.986
RMCT_3825
Transmembrane protein.
       0.756
PtpA_1
Phosphotyrosine protein phosphatase ptpA; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.686
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.671
PgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.
     
 0.647
PgsA3
Phosphatidylglycerophosphate synthase pgsA3; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.647
AhpF
Thioredoxin reductase.
       0.646
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
    0.643
RMCT_3827
HAD family hydrolase.
       0.641
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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