Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
PimBGlycoside hydrolase family protein. (383 aa)    
Predicted Functional Partners:
RMCT_3746
Lipid A biosynthesis lauroyl acyltransferase.
 
  
 0.868
RMCT_3883
NLP/P60 protein.
 
  
 0.865
RMCT_3884
Putative uncharacterized protein.
  
  
 0.856
TreZ
Maltooligosyltrehalose trehalohydrolase treZ.
  
 0.789
glgB
Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 0.786
PimE
Mannosyltransferase.
  
  
 0.700
GlfT2
Bifunctional UDP-galactofuranosyl transferase glfT.
  
  
 0.698
RMCT_2185
Glycogen phosphorylase glgP.
  
 
 0.639
RMCT_3671
ERCC4 domain-containing protein.
   
 0.626
dnaQ-2
DNA polymerase III subunit epsilon.
 
 
 
 0.599
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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