Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_3892Integral membrane protein. (435 aa)    
Predicted Functional Partners:
RMCT_4131
Transmembrane protein.
 
  
 0.654
RMCT_1665
Integral membrane protein.
  
     0.632
RMCT_0610
Integral membrane sensor signal transduction histidine kinase.
 
 
 
 0.620
EccB1_1
Type VII secretion protein EccB, Actinobacterial.
 
   
 0.600
RMCT_3893
Integral membrane protein.
 
     0.599
RMCT_3894
Gp101; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
       0.598
AroG_2
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase aroG; Belongs to the class-II DAHP synthase family.
       0.598
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.572
RMCT_2014
Transmembrane protein.
 
   
 0.559
RMCT_1153
Transmembrane protein.
 
     0.544
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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