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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_3897Regulatory protein. (134 aa)    
Predicted Functional Partners:
PrkC
Transmembrane serine/threonine-protein kinase L pknL.
     
 0.900
RMCT_3894
Gp101; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
      
 0.744
IdeR_1
Transcriptional repressor sirR.
   
    0.699
RMCT_1782
DNA-binding protein.
  
     0.588
cobB-2
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
   
    0.587
RMCT_1765
MarR family transcriptional regulator.
   
    0.580
EthR_1
Transcriptional regulator.
   
  
 0.574
YybR
HxlR family transcriptional regulator.
   
    0.551
AroG_2
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase aroG; Belongs to the class-II DAHP synthase family.
     
 0.546
MsrR_3
Transcriptional regulator.
   
    0.544
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.