Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_3900Lipoprotein lppM. (247 aa)    
Predicted Functional Partners:
IspB
Geranylgeranyl pyrophosphate synthetase idsA2; Belongs to the FPP/GGPP synthase family.
 
   
 0.836
RMCT_0712
Transmembrane protein.
  
     0.755
RMCT_0031
Hypothetical protein.
  
     0.740
RMCT_2349
Hypothetical protein.
 
     0.738
RMCT_1437
Hypothetical protein.
  
     0.737
RMCT_1104
Protein of unknown function.
  
     0.728
RMCT_3480
Hypothetical protein.
  
     0.711
RMCT_2757
Putative uncharacterized protein.
  
     0.704
RMCT_1427
Putative uncharacterized protein.
  
     0.678
RMCT_3898
Integral membrane protein.
 
     0.672
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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