Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCT_3949Putative uncharacterized protein. (166 aa)    
Predicted Functional Partners:
BigR_2
ArsR family transcriptional regulator.
 
  
 0.865
WrbA
Multimeric flavodoxin WrbA.
       0.784
RMCT_3951
Putative uncharacterized protein.
       0.564
RMCT_3952
Recombinase B.
       0.564
RMCT_2436
Putative uncharacterized protein.
 
     0.551
RMCT_0121
Phage integrase family protein.
 
     0.534
RMCT_3218
AAA domain protein.
 
     0.488
RMCT_2949
Putative uncharacterized protein.
 
    0.483
YcjO_2
Sugar-transport integral membrane protein ABC transporter sugA.
  
    0.459
RMCT_3780
Isochorismatase hydrolase.
 
     0.432
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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