STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fdx_13Fe-4S ferredoxin. (64 aa)    
Predicted Functional Partners:
CalB_2
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.788
FprA_1
4Fe-4S ferredoxin.
     
 0.777
RMCT_3963
NikQ protein; Belongs to the cytochrome P450 family.
 
  
 0.717
HsdA_2
3-alpha-hydroxysteroid dehydrogenase.
 
     0.680
RMCT_3964
crotonobetaine/carnitine-CoA ligase.
       0.611
RMCT_1882
Cytochrome P450 51.
  
  
 0.609
SubB_6
Ferredoxin.
  
     0.494
RMCT_3970
Phytoene dehydrogenase family protein.
 
     0.492
FabG_28
Short chain dehydrogenase.
  
    0.463
RMCT_3219
Short-chain dehydrogenase/reductase SDR.
 
     0.433
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.