Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCT_3963NikQ protein; Belongs to the cytochrome P450 family. (422 aa)    
Predicted Functional Partners:
RMCT_3964
crotonobetaine/carnitine-CoA ligase.
 
  0.889
HsdA_2
3-alpha-hydroxysteroid dehydrogenase.
  
   0.814
FprA_1
4Fe-4S ferredoxin.
    
 0.765
Fdx_1
3Fe-4S ferredoxin.
 
  
 0.716
PpsA_2
Beta-ketoacyl synthase.
  
 0.704
CalB_2
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.692
RecQ_1
ATP-dependent DNA helicase.
   
 0.649
PpsA_7
Polyketide synthase pks13.
  
 0.646
BcrC
Sphingosine/diacylglycerol kinase-like enzyme.
  
 0.644
RMCT_2925
Phosphoesterase, PA-phosphatase related protein.
  
 0.621
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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