Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RMCT_3964crotonobetaine/carnitine-CoA ligase. (496 aa)    
Predicted Functional Partners:
Pks2
Polyketide synthase pks5.
  
 0.908
RMCT_3963
NikQ protein; Belongs to the cytochrome P450 family.
 
  0.889
HsdA_2
3-alpha-hydroxysteroid dehydrogenase.
  
 
 0.818
PpsA_2
Beta-ketoacyl synthase.
  
 0.808
EryA_1
Acyl transferase domain-containing protein.
  
 0.805
CalB_2
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.720
PpsA_7
Polyketide synthase pks13.
  
 0.717
PpsA_3
Beta-ketoacyl synthase.
  
 0.636
FprA_1
4Fe-4S ferredoxin.
     
 0.613
Fdx_1
3Fe-4S ferredoxin.
       0.611
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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