Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RMCT_3992 | RMCT_4006 | RMCT_3992 | RMCT_4006 | Glycoside hydrolase, family 76. | Conserved protein of unknown function. | 0.508 |
RMCT_3992 | RMCT_4007 | RMCT_3992 | RMCT_4007 | Glycoside hydrolase, family 76. | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.508 |
RMCT_3992 | RMCT_4008 | RMCT_3992 | RMCT_4008 | Glycoside hydrolase, family 76. | Secreted protein. | 0.462 |
RMCT_3992 | TrmH_1 | RMCT_3992 | RMCT_4005 | Glycoside hydrolase, family 76. | RNA methyltransferase. | 0.508 |
RMCT_3992 | pyrE | RMCT_3992 | RMCT_1275 | Glycoside hydrolase, family 76. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.443 |
RMCT_4006 | RMCT_3992 | RMCT_4006 | RMCT_3992 | Conserved protein of unknown function. | Glycoside hydrolase, family 76. | 0.508 |
RMCT_4006 | RMCT_4007 | RMCT_4006 | RMCT_4007 | Conserved protein of unknown function. | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.857 |
RMCT_4006 | RMCT_4008 | RMCT_4006 | RMCT_4008 | Conserved protein of unknown function. | Secreted protein. | 0.766 |
RMCT_4006 | RMCT_4009 | RMCT_4006 | RMCT_4009 | Conserved protein of unknown function. | Transcriptional regulator. | 0.458 |
RMCT_4006 | TrmH_1 | RMCT_4006 | RMCT_4005 | Conserved protein of unknown function. | RNA methyltransferase. | 0.883 |
RMCT_4006 | pyrE | RMCT_4006 | RMCT_1275 | Conserved protein of unknown function. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.508 |
RMCT_4007 | RMCT_3992 | RMCT_4007 | RMCT_3992 | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Glycoside hydrolase, family 76. | 0.508 |
RMCT_4007 | RMCT_4006 | RMCT_4007 | RMCT_4006 | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Conserved protein of unknown function. | 0.857 |
RMCT_4007 | RMCT_4008 | RMCT_4007 | RMCT_4008 | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Secreted protein. | 0.750 |
RMCT_4007 | RMCT_4009 | RMCT_4007 | RMCT_4009 | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Transcriptional regulator. | 0.483 |
RMCT_4007 | TrmH_1 | RMCT_4007 | RMCT_4005 | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | RNA methyltransferase. | 0.859 |
RMCT_4007 | pyrE | RMCT_4007 | RMCT_1275 | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.508 |
RMCT_4008 | RMCT_3992 | RMCT_4008 | RMCT_3992 | Secreted protein. | Glycoside hydrolase, family 76. | 0.462 |
RMCT_4008 | RMCT_4006 | RMCT_4008 | RMCT_4006 | Secreted protein. | Conserved protein of unknown function. | 0.766 |
RMCT_4008 | RMCT_4007 | RMCT_4008 | RMCT_4007 | Secreted protein. | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.750 |
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