STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_4009Transcriptional regulator. (225 aa)    
Predicted Functional Partners:
KshA_2
Rieske (2Fe-2S) protein.
       0.763
RMCT_4011
Dihydrodipicolinate reductase.
       0.763
RMCT_4008
Secreted protein.
       0.616
RMCT_4007
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.483
TrmH_1
RNA methyltransferase.
       0.458
RMCT_4006
Conserved protein of unknown function.
       0.458
RMCT_3850
TIGR01777 family protein.
  
    0.434
RMCT_3922
NAD-dependent nucleoside-diphosphate sugar epimerase.
  
    0.434
Rng
Ribonuclease E.
  
    0.423
SipT
Signal peptidase I lepB; Belongs to the peptidase S26 family.
   
    0.408
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.