Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
KshA_2Rieske (2Fe-2S) protein. (344 aa)    
Predicted Functional Partners:
RMCT_4011
Dihydrodipicolinate reductase.
 
     0.941
Hmp_2
3-ketosteroid 9alpha-hydroxylase component KshB.
 
 
 0.935
Hmp_6
Hemoglobine-related protein hmp.
 
 
 0.935
KshA_4
Iron-sulfur binding oxidoreductase.
  
  
 
0.925
Hmp_3
Ferredoxin.
  
 
 0.925
KshA_8
Rieske (2Fe-2S) domain-containing protein.
  
  
 
0.925
KshA_5
Ring-hydroxylating dioxygenase, large terminal subunit.
  
  
 
0.911
KshA_6
Iron-sulfur cluster-binding protein, Rieske family protein.
  
  
 
0.909
RMCT_4009
Transcriptional regulator.
       0.732
KstD_2
3-ketosteroid-delta-1-dehydrogenase.
    
 0.687
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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