Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ald | AspC_1 | RMCT_4313 | RMCT_4039 | Secreted L-alanine dehydrogenase ald; Belongs to the AlaDH/PNT family. | Aminotransferase AlaT. | 0.910 |
ArgA | AspC_1 | RMCT_0745 | RMCT_4039 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. | Aminotransferase AlaT. | 0.913 |
ArgA | GdhA | RMCT_0745 | RMCT_1548 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. | Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.917 |
ArgA | GdhB_2 | RMCT_0745 | RMCT_0907 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. | NAD-dependent glutamate dehydrogenase gdh. | 0.900 |
ArgA | RMCT_2708 | RMCT_0745 | RMCT_2708 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. | GCN5-like N-acetyltransferase. | 0.912 |
ArgA | argJ | RMCT_0745 | RMCT_4496 | N-acetylglutamate synthase; Belongs to the acetyltransferase family. | Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.973 |
AspC_1 | Ald | RMCT_4039 | RMCT_4313 | Aminotransferase AlaT. | Secreted L-alanine dehydrogenase ald; Belongs to the AlaDH/PNT family. | 0.910 |
AspC_1 | ArgA | RMCT_4039 | RMCT_0745 | Aminotransferase AlaT. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. | 0.913 |
AspC_1 | GdhA | RMCT_4039 | RMCT_1548 | Aminotransferase AlaT. | Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.919 |
AspC_1 | GdhB_2 | RMCT_4039 | RMCT_0907 | Aminotransferase AlaT. | NAD-dependent glutamate dehydrogenase gdh. | 0.909 |
AspC_1 | IlvE | RMCT_4039 | RMCT_3857 | Aminotransferase AlaT. | Branched-chain amino acid aminotransferase. | 0.918 |
AspC_1 | RMCT_2708 | RMCT_4039 | RMCT_2708 | Aminotransferase AlaT. | GCN5-like N-acetyltransferase. | 0.912 |
AspC_1 | argJ | RMCT_4039 | RMCT_4496 | Aminotransferase AlaT. | Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.915 |
AspC_1 | fumC | RMCT_4039 | RMCT_1439 | Aminotransferase AlaT. | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.858 |
AspC_1 | ilvD | RMCT_4039 | RMCT_2030 | Aminotransferase AlaT. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.936 |
AspC_1 | leuA | RMCT_4039 | RMCT_0059 | Aminotransferase AlaT. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.919 |
GdhA | ArgA | RMCT_1548 | RMCT_0745 | Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. | 0.917 |
GdhA | AspC_1 | RMCT_1548 | RMCT_4039 | Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Aminotransferase AlaT. | 0.919 |
GdhA | GdhB_2 | RMCT_1548 | RMCT_0907 | Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | NAD-dependent glutamate dehydrogenase gdh. | 0.930 |
GdhA | IlvE | RMCT_1548 | RMCT_3857 | Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Branched-chain amino acid aminotransferase. | 0.426 |
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