Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_4067PE family protein. (100 aa)    
Predicted Functional Partners:
EsxR
EsaT-6 like protein EsxH; Belongs to the WXG100 family.
  
 
 0.998
EspG1_2
DNA-binding protein.
  
  
 0.939
Snm
Transmembrane protein.
  
  
 0.933
EsxB
WXG repeat protein; Belongs to the WXG100 family.
   
 
 0.904
RMCT_4069
PE family protein.
     
 0.901
EsxA
6 kDa early secretory antigenic target esxA, Esat-6; Belongs to the WXG100 family.
   
 
 0.899
RMCT_4068
PPE family protein.
  
  
 0.855
RMCT_4063
Membrane-anchored mycosin mycP3.
  
  
 0.851
RMCT_4062
Putative uncharacterized protein.
  
  
 0.841
RMCT_0540
Esat-6 like protein esxU; Belongs to the WXG100 family.
   
 
 0.796
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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