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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EccB1_2Type VII secretion protein EccB, Actinobacterial. (522 aa)    
Predicted Functional Partners:
EccCa1_2
Cell division protein FtsK.
 
 
 0.967
Snm
Transmembrane protein.
 
 
 0.918
RMCT_4063
Membrane-anchored mycosin mycP3.
 
 
 0.900
EccA1_2
ATPase central domain-containing protein.
 
  
 0.869
RMCT_0537
Putative uncharacterized protein.
 
 
 0.836
RMCT_4068
PPE family protein.
     
 0.790
RMCT_4069
PE family protein.
     
 0.789
EccCa1_3
Cell division FtsK/SpoIIIE.
 
 
 0.777
RMCT_4667
Cutinase.
 
 
 0.774
RMCT_3585
Pyrrolo-quinoline quinone.
 
   
 0.749
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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