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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FabG_1Short-chain dehydrogenase/reductase SDR. (267 aa)    
Predicted Functional Partners:
KasA_2
Fatty acid synthase.
  
 0.782
HsdA_1
Short-chain dehydrogenase.
 
     0.705
HsaA_3
acyl-CoA dehydrogenase.
 
  0.684
Ksi_2
Steroid delta-isomerase.
 
     0.676
HsaA_1
Hydroxylase.
 
  0.648
RMCT_3208
Putative uncharacterized protein.
  
     0.648
HhoB_2
Trypsin-like serine protease with C-terminal PDZ domain.
 
 0.633
FabD
Malonyl CoA-acyl carrier protein transacylase fabD.
 
 
 0.630
HsaA_2
Pigment production hydroxylase.
 
  0.620
RMCT_2889
acyl-CoA dehydrogenase.
 
  0.619
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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