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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YbbDBeta-glucosidase-like glycosyl hydrolase. (373 aa)    
Predicted Functional Partners:
EstB_5
Beta-lactamase.
 
  
 0.925
FadR_1
TetR family transcriptional regulator.
     
 0.785
RMCT_4129
UspA domain-containing protein.
     
 0.628
RMCT_4131
Transmembrane protein.
     
 0.596
RMCT_4130
Small secreted protein.
       0.559
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.536
RMCT_0264
Putative uncharacterized protein.
  
  
 0.500
RMCT_0914
Putative uncharacterized protein.
  
  
 0.500
RMCT_1070
Calcium-binding lipoprotein.
  
  
 0.500
LpqK
Serine-type D-Ala-D-Ala carboxypeptidase.
 
  
 0.491
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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