Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_4131Transmembrane protein. (1418 aa)    
Predicted Functional Partners:
RMCT_0667
Integral membrane protein.
 
  
 0.985
RMCT_4137
Transmembrane protein.
 
   
 0.888
RMCT_4147
Methyltransferase.
  
 0.850
RMCT_4130
Small secreted protein.
       0.814
RMCT_4662
Transmembrane protein.
 
   
 0.785
RMCT_4129
UspA domain-containing protein.
     
 0.773
RMCT_4136
Protein of unknown function.
 
   
 0.772
AftA
Transmembrane protein.
 
   
 0.721
RMCT_0772
lysine-N-oxygenase mbtG.
  
     0.720
PimE
Mannosyltransferase.
 
  
 0.703
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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