STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CrtYcLycopene cyclase, CrtYc. (119 aa)    
Predicted Functional Partners:
RMCT_4140
Lycopene cyclase CrtYd.
 
     0.972
Pds
Isorenieratene synthase.
 
     0.962
KshA_1
Rieske (2Fe-2S) domain-containing protein.
 
     0.953
CrtM
Phytoene synthase.
 
   
 0.927
RMCT_1234
Phytoene dehydrogenase.
 
   
 0.706
UbiE_3
Ubiquinone/menaquinone biosynthesis methyltransferase.
 
     0.706
RMCT_4137
Transmembrane protein.
       0.513
RMCT_4136
Protein of unknown function.
       0.437
RMCT_2415
Receptor ligand binding region family protein.
 
     0.431
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.