Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KshA_1Rieske (2Fe-2S) domain-containing protein. (351 aa)    
Predicted Functional Partners:
Pds
Isorenieratene synthase.
   
 0.988
CrtM
Phytoene synthase.
   
 0.968
RMCT_4140
Lycopene cyclase CrtYd.
 
     0.956
CrtYc
Lycopene cyclase, CrtYc.
 
     0.946
UbiE_3
Ubiquinone/menaquinone biosynthesis methyltransferase.
 
   
 0.871
RMCT_1234
Phytoene dehydrogenase.
 
   
 0.720
AndAd
Aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.703
AntB
Beta subunit of hydroxylase component of benzoate 1,2-dioxygenase.
  
 
 0.659
RMCT_4137
Transmembrane protein.
       0.513
RMCT_4136
Protein of unknown function.
       0.437
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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