STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KshA_1Rieske (2Fe-2S) domain-containing protein. (351 aa)    
Predicted Functional Partners:
Pds
Isorenieratene synthase.
   
 0.989
CrtM
Phytoene synthase.
   
 0.972
RMCT_4140
Lycopene cyclase CrtYd.
 
     0.961
CrtYc
Lycopene cyclase, CrtYc.
 
     0.953
UbiE_3
Ubiquinone/menaquinone biosynthesis methyltransferase.
 
   
 0.890
RMCT_1234
Phytoene dehydrogenase.
 
   
 0.763
AndAd
Aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.708
AntB
Beta subunit of hydroxylase component of benzoate 1,2-dioxygenase.
  
 
 0.665
RMCT_4137
Transmembrane protein.
       0.513
RMCT_4450
Polyketide cyclase/dehydrase and lipid transport.
 
 
 
 0.448
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.