Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Amt | GlnA_1 | RMCT_4203 | RMCT_3839 | Ammonium transporter. | Glutamine synthetase. | 0.756 |
Amt | GlnA_2 | RMCT_4203 | RMCT_3845 | Ammonium transporter. | Glutamine synthetase glnA1. | 0.776 |
Amt | GlnB | RMCT_4203 | RMCT_4204 | Ammonium transporter. | Nitrogen regulatory protein P-II glnB; Belongs to the P(II) protein family. | 0.999 |
Amt | GltB | RMCT_4203 | RMCT_1227 | Ammonium transporter. | Ferredoxin-dependent glutamate synthase, large subunit gltB. | 0.971 |
Amt | KstR2_8 | RMCT_4203 | RMCT_2788 | Ammonium transporter. | Transcription regulator AmtR. | 0.461 |
Amt | glnD | RMCT_4203 | RMCT_4205 | Ammonium transporter. | PII uridylyl-transferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.893 |
Amt | glnE | RMCT_4203 | RMCT_3840 | Ammonium transporter. | Glutamate-ammonia-ligase adenylyltransferase glnE; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal t [...] | 0.507 |
DraG | GlnB | RMCT_2453 | RMCT_4204 | ADP-ribosylation/Crystallin J1. | Nitrogen regulatory protein P-II glnB; Belongs to the P(II) protein family. | 0.795 |
EspK_1 | GlnB | RMCT_1038 | RMCT_4204 | Putative uncharacterized protein. | Nitrogen regulatory protein P-II glnB; Belongs to the P(II) protein family. | 0.666 |
GlnA_1 | Amt | RMCT_3839 | RMCT_4203 | Glutamine synthetase. | Ammonium transporter. | 0.756 |
GlnA_1 | GlnA_2 | RMCT_3839 | RMCT_3845 | Glutamine synthetase. | Glutamine synthetase glnA1. | 0.930 |
GlnA_1 | GlnB | RMCT_3839 | RMCT_4204 | Glutamine synthetase. | Nitrogen regulatory protein P-II glnB; Belongs to the P(II) protein family. | 0.781 |
GlnA_1 | GltB | RMCT_3839 | RMCT_1227 | Glutamine synthetase. | Ferredoxin-dependent glutamate synthase, large subunit gltB. | 0.991 |
GlnA_1 | glnD | RMCT_3839 | RMCT_4205 | Glutamine synthetase. | PII uridylyl-transferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.832 |
GlnA_1 | glnE | RMCT_3839 | RMCT_3840 | Glutamine synthetase. | Glutamate-ammonia-ligase adenylyltransferase glnE; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal t [...] | 0.937 |
GlnA_2 | Amt | RMCT_3845 | RMCT_4203 | Glutamine synthetase glnA1. | Ammonium transporter. | 0.776 |
GlnA_2 | GlnA_1 | RMCT_3845 | RMCT_3839 | Glutamine synthetase glnA1. | Glutamine synthetase. | 0.930 |
GlnA_2 | GlnB | RMCT_3845 | RMCT_4204 | Glutamine synthetase glnA1. | Nitrogen regulatory protein P-II glnB; Belongs to the P(II) protein family. | 0.910 |
GlnA_2 | GltB | RMCT_3845 | RMCT_1227 | Glutamine synthetase glnA1. | Ferredoxin-dependent glutamate synthase, large subunit gltB. | 0.991 |
GlnA_2 | glnD | RMCT_3845 | RMCT_4205 | Glutamine synthetase glnA1. | PII uridylyl-transferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.859 |
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