Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DacB_3D-alanyl-D-alanine carboxypeptidase dacB2; Belongs to the peptidase S11 family. (309 aa)    
Predicted Functional Partners:
DacB_2
D-alanyl-D-alanine carboxypeptidase dacB2; Belongs to the peptidase S11 family.
 
  
 
0.954
DacB_4
D-alanyl-D-alanine carboxypeptidase.
    
 0.953
PenA
Penicillin-binding membrane protein pbpB.
 
 
 0.950
PbpA_1
Penicillin-binding protein pbpA.
 
 
 0.945
RMCT_0280
Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins.
    
 0.911
DacB_1
Penicillin-binding protein dacB1; Belongs to the peptidase S11 family.
  
  
 
0.909
RMCT_4210
Hypothetical protein.
       0.735
RMCT_4211
Magnesium transporter; Acts as a magnesium transporter.
     
 0.592
dnaA
Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.491
LytC
Hydrolase.
 
  
 0.455
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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