Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_4210Hypothetical protein. (141 aa)    
Predicted Functional Partners:
RMCT_4211
Magnesium transporter; Acts as a magnesium transporter.
       0.773
RMCT_0323
Hypothetical protein.
  
     0.758
DacB_3
D-alanyl-D-alanine carboxypeptidase dacB2; Belongs to the peptidase S11 family.
       0.735
RMCT_3208
Putative uncharacterized protein.
  
     0.609
RMCT_2088
Hypothetical protein.
 
     0.600
BaiE_1
Hypothetical protein.
 
    0.588
rpsP
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
       0.580
RMCT_4213
RNA-binding protein; Belongs to the UPF0109 family.
       0.578
RMCT_4061
Prolyl oligopeptidase family protein.
 
   
 0.569
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.537
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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