STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_4225TIGR00252 family protein; Belongs to the UPF0102 family. (120 aa)    
Predicted Functional Partners:
ComM
Mg chelatase-like protein.
 
  
 0.971
Smf
DNA protecting protein DprA.
 
    0.952
ViuB
Mycobactin utilization protein viuB.
       0.742
ruvC
Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
     0.654
RMCT_3507
Metal-binding protein.
 
     0.596
RMCT_4559
Stage II sporulation protein E.
  
    0.564
EcfT
Cobalt transport protein.
     
 0.556
SrfAB
AMP-dependent synthetase and ligase.
       0.556
RMCT_4229
Lactate 2-monooxygenase.
       0.552
RMCT_0804
ComEC/Rec2-like protein.
 
    0.531
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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