STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ViuBMycobactin utilization protein viuB. (288 aa)    
Predicted Functional Partners:
ComM
Mg chelatase-like protein.
       0.771
Smf
DNA protecting protein DprA.
       0.771
RMCT_4229
Lactate 2-monooxygenase.
       0.758
RMCT_4225
TIGR00252 family protein; Belongs to the UPF0102 family.
       0.742
DhbE_1
Bifunctional enzyme mbtA: salicyl-AMP ligase + salicyl-S-arcp synthetase.
 
  
 0.680
xerC
Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.667
RMCT_0772
lysine-N-oxygenase mbtG.
 
  
 0.568
MbtB_2
Phenyloxazoline synthase mbtB.
  
  
 0.552
RMCT_0234
XRE family transcriptional regulator.
  
     0.521
PabB
Para-aminobenzoate synthase component I pabD.
  
  
 0.478
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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