Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Dop | RMCT_0008 | RMCT_4331 | RMCT_0008 | Proteasome component. | Hypothetical protein. | 0.691 |
| Dop | arc | RMCT_4331 | RMCT_4326 | Proteasome component. | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.877 |
| Dop | pafA | RMCT_4331 | RMCT_4335 | Proteasome component. | Proteasome component; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.532 |
| Dop | prcA | RMCT_4331 | RMCT_4334 | Proteasome component. | Proteasome alpha subunit prcA; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.950 |
| Dop | prcB | RMCT_4331 | RMCT_4333 | Proteasome component. | Proteasome beta subunit prcB; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.944 |
| Dop | pup | RMCT_4331 | RMCT_4332 | Proteasome component. | Ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. | 0.961 |
| EccA1_1 | Mec | RMCT_1055 | RMCT_2193 | Type VII secretion AAA-ATPase EccA. | Mov34/MPN/PAD-1 family protein. | 0.741 |
| EccA1_1 | arc | RMCT_1055 | RMCT_4326 | Type VII secretion AAA-ATPase EccA. | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.716 |
| EccA1_1 | glpK | RMCT_1055 | RMCT_0079 | Type VII secretion AAA-ATPase EccA. | Glycerol kinase GlpK; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.740 |
| EccA1_1 | prcA | RMCT_1055 | RMCT_4334 | Type VII secretion AAA-ATPase EccA. | Proteasome alpha subunit prcA; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.736 |
| EccA1_1 | prcB | RMCT_1055 | RMCT_4333 | Type VII secretion AAA-ATPase EccA. | Proteasome beta subunit prcB; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.736 |
| FtsH2 | Mec | RMCT_0334 | RMCT_2193 | ATPase central domain-containing protein; Belongs to the AAA ATPase family. | Mov34/MPN/PAD-1 family protein. | 0.707 |
| FtsH2 | arc | RMCT_0334 | RMCT_4326 | ATPase central domain-containing protein; Belongs to the AAA ATPase family. | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.716 |
| FtsH2 | glpK | RMCT_0334 | RMCT_0079 | ATPase central domain-containing protein; Belongs to the AAA ATPase family. | Glycerol kinase GlpK; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.740 |
| FtsH2 | prcA | RMCT_0334 | RMCT_4334 | ATPase central domain-containing protein; Belongs to the AAA ATPase family. | Proteasome alpha subunit prcA; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.736 |
| FtsH2 | prcB | RMCT_0334 | RMCT_4333 | ATPase central domain-containing protein; Belongs to the AAA ATPase family. | Proteasome beta subunit prcB; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.736 |
| Mec | EccA1_1 | RMCT_2193 | RMCT_1055 | Mov34/MPN/PAD-1 family protein. | Type VII secretion AAA-ATPase EccA. | 0.741 |
| Mec | FtsH2 | RMCT_2193 | RMCT_0334 | Mov34/MPN/PAD-1 family protein. | ATPase central domain-containing protein; Belongs to the AAA ATPase family. | 0.707 |
| Mec | arc | RMCT_2193 | RMCT_4326 | Mov34/MPN/PAD-1 family protein. | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.988 |
| Mec | glpK | RMCT_2193 | RMCT_0079 | Mov34/MPN/PAD-1 family protein. | Glycerol kinase GlpK; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.982 |
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