Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EstB_1Penicillin-binding protein, beta-lactamase class C. (420 aa)    
Predicted Functional Partners:
RMCT_4373
Arginine/ornithine transport system ATPase.
       0.692
MutA
methylmalonyl-CoA mutase small subunit mutA.
       0.690
MutB
methylmalonyl-CoA mutase.
       0.690
RipA
NLP/P60 protein.
  
  
 0.623
MlhB
Esterase/lipase.
  
  
 0.604
RMCT_4370
Piso0_003360 protein.
       0.590
RMCT_4368
Putative uncharacterized protein.
  
  
 0.489
YdjZ
Integral membrane protein.
       0.473
EstB_2
Beta-lactamase.
 
     0.450
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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