Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DhbC | DhbE_1 | RMCT_2338 | RMCT_0779 | Isochorismate synthase. | Bifunctional enzyme mbtA: salicyl-AMP ligase + salicyl-S-arcp synthetase. | 0.939 |
| DhbC | RMCT_1677 | RMCT_2338 | RMCT_1677 | Isochorismate synthase. | Chorismate mutase. | 0.905 |
| DhbC | TrpG | RMCT_2338 | RMCT_1101 | Isochorismate synthase. | Para-aminobenzoate synthase component II. | 0.775 |
| DhbC | aroC | RMCT_2338 | RMCT_3679 | Isochorismate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.935 |
| DhbC | trpA | RMCT_2338 | RMCT_4434 | Isochorismate synthase. | Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.667 |
| DhbC | trpB | RMCT_2338 | RMCT_4433 | Isochorismate synthase. | Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.600 |
| DhbC | trpC | RMCT_2338 | RMCT_4432 | Isochorismate synthase. | Indole-3-glycerol phosphate synthase trpC; Belongs to the TrpC family. | 0.789 |
| DhbC | trpE | RMCT_2338 | RMCT_4430 | Isochorismate synthase. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.875 |
| DhbE_1 | DhbC | RMCT_0779 | RMCT_2338 | Bifunctional enzyme mbtA: salicyl-AMP ligase + salicyl-S-arcp synthetase. | Isochorismate synthase. | 0.939 |
| DhbE_1 | EryA_2 | RMCT_0779 | RMCT_0776 | Bifunctional enzyme mbtA: salicyl-AMP ligase + salicyl-S-arcp synthetase. | Polyketide synthetase mbtC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.969 |
| DhbE_1 | RMCT_1677 | RMCT_0779 | RMCT_1677 | Bifunctional enzyme mbtA: salicyl-AMP ligase + salicyl-S-arcp synthetase. | Chorismate mutase. | 0.508 |
| DhbE_1 | trpE | RMCT_0779 | RMCT_4430 | Bifunctional enzyme mbtA: salicyl-AMP ligase + salicyl-S-arcp synthetase. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.938 |
| EryA_2 | DhbE_1 | RMCT_0776 | RMCT_0779 | Polyketide synthetase mbtC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Bifunctional enzyme mbtA: salicyl-AMP ligase + salicyl-S-arcp synthetase. | 0.969 |
| EryA_2 | trpE | RMCT_0776 | RMCT_4430 | Polyketide synthetase mbtC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.914 |
| RMCT_1677 | DhbC | RMCT_1677 | RMCT_2338 | Chorismate mutase. | Isochorismate synthase. | 0.905 |
| RMCT_1677 | DhbE_1 | RMCT_1677 | RMCT_0779 | Chorismate mutase. | Bifunctional enzyme mbtA: salicyl-AMP ligase + salicyl-S-arcp synthetase. | 0.508 |
| RMCT_1677 | TrpG | RMCT_1677 | RMCT_1101 | Chorismate mutase. | Para-aminobenzoate synthase component II. | 0.914 |
| RMCT_1677 | aroC | RMCT_1677 | RMCT_3679 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.973 |
| RMCT_1677 | trpE | RMCT_1677 | RMCT_4430 | Chorismate mutase. | Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.948 |
| RMCT_4431 | trpA | RMCT_4431 | RMCT_4434 | Hypothetical protein. | Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.455 |
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