Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CydDTransmembrane ATP-binding protein ABC transporter cydD. (525 aa)    
Predicted Functional Partners:
CydC
Component linked with the assembly of cytochrome' ABC transporter ATP-binding protein CydC.
0.999
CydB
Integral membrane cytochrome D ubiquinol oxidase subunit II cydB.
 
  
 0.995
AppC
Integral membrane cytochrome D ubiquinol oxidase subunit I cydA.
 
  
 0.993
RMCT_4440
Putative uncharacterized protein.
       0.773
RMCT_4445
Conserved membrane protein.
       0.672
NarG
Respiratory nitrate reductase subunit alpha narG; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.471
menG
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
 
   
 0.437
ArtM_3
Polar amino acid ABC transporter ATPase.
     
0.434
NarL
Two-component system response regulator.
     
 0.407
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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