STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LptB_2Branched-chain amino acid ABC transporter ATPase. (275 aa)    
Predicted Functional Partners:
RMCT_4455
Branched chain amino acid transport permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
LivH_1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
BraC
Extracellular ligand-binding receptor.
 
 
 0.996
LivF_1
Branched-chain amino acid ABC transporter ATPase.
 
 
0.993
LivH_2
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.917
RMCT_3715
Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.884
LivF_2
Urea ABC transporter, ATPase subunit UrtE.
 
  
0.804
AmiC
Extracellular ligand-binding receptor.
 
  
 0.683
RMCT_2150
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
  
  
 0.603
RMCT_2415
Receptor ligand binding region family protein.
  
  
 0.603
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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