Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCT_4484Sugar phosphate isomerase/epimerase. (120 aa)    
Predicted Functional Partners:
RMCT_4316
Transmembrane protein.
  
     0.774
RMCT_0638
Succinate dehydrogenase.
  
     0.773
RMCT_0639
Succinate dehydrogenase.
  
     0.773
YhcM
ATP/GTP-binding integral membrane protein.
  
     0.773
RMCT_4485
Putative ATPase.
       0.773
RMCT_3660
Export or membrane protein.
  
     0.771
SdhB
Succinate dehydrogenase iron-sulfur subunit.
  
     0.729
SdhA_2
Succinate dehydrogenase flavoprotein subunit.
  
     0.679
InfC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.631
PspA
Hypothetical protein.
       0.610
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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