STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrsA_2acyl-CoA synthetase. (1000 aa)    
Predicted Functional Partners:
RMCT_4519
Hypothetical protein; Belongs to the UPF0434 family.
 
    0.829
PpsA_2
Beta-ketoacyl synthase.
  
 0.818
Pks2
Polyketide synthase pks5.
  
 0.797
EryA_1
Acyl transferase domain-containing protein.
  
 0.787
PpsA_7
Polyketide synthase pks13.
  
 0.774
RMCT_1407
Hypothetical protein.
 
 
 0.729
PpsA_3
Beta-ketoacyl synthase.
  
 0.717
RMCT_1882
Cytochrome P450 51.
 
 0.707
BcrC
Sphingosine/diacylglycerol kinase-like enzyme.
 
 
 0.707
RMCT_2925
Phosphoesterase, PA-phosphatase related protein.
 
 0.698
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.