Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_4539Putative uncharacterized protein. (354 aa)    
Predicted Functional Partners:
RMCT_4538
Transcriptional regulator.
 
     0.861
FadH_3
NADPH-dependent 2,4-dienoyl-CoA reductase.
       0.784
RMCT_0198
RDD domain-containing protein.
  
     0.680
RMCT_4541
Predicted transcriptional regulator.
 
     0.659
RMCT_3787
Putative uncharacterized protein.
  
     0.473
DevR_1
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
     0.463
PqsD
3-oxoacyl-(acyl-carrier-protein) synthase III.
 
     0.457
RMCT_1168
Putative uncharacterized protein.
  
     0.453
RMCT_1163
Putative uncharacterized protein.
  
     0.451
RMCT_0404
Hypothetical protein.
  
     0.444
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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