Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
YidACof family hydrolase. (271 aa)    
Predicted Functional Partners:
RMCT_4653
Acyltransferase.
  
  
 0.741
RMCT_4654
Acyltransferase.
  
  
 0.739
RMCT_4652
Rieske (2Fe-2S) domain-containing protein.
     
 0.704
RMCT_3554
Amino acid-binding ACT domain-containing protein.
 
  
 0.546
GlgC_1
Nucleoside-diphosphate-sugar pyrophosphorylase family protein.
 
  
 0.511
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.490
pgi-2
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.490
Pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.471
RMCT_3898
Integral membrane protein.
 
 
 0.469
RMCT_3155
Integral membrane protein.
 
 
 0.468
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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