STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DprE1_2Oxidoreductase. (463 aa)    
Predicted Functional Partners:
RMCT_4676
Short chain dehydrogenase.
 
 
 0.997
EmbC_1
Integral membrane indolylacetylinositol arabinosyltransferase embC.
 
  
 0.958
RMCT_4661
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.931
AftA
Transmembrane protein.
 
   
 0.913
EmbA
Integral membrane indolylacetylinositol arabinosyltransferase embA.
 
  
 0.907
EmbC_2
Integral membrane indolylacetylinositol arabinosyltransferase embB.
 
  
 0.886
RMCT_0002
Integral membrane protein.
 
   
 0.885
RMCT_4346
Short-chain type dehydrogenase.
 
  
 0.810
RMCT_4660
Transmembrane protein.
 
  
 0.783
MdlB
L-lactate dehydrogenase (cytochrome) lldD2.
  
 0.700
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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