STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LgrD_3Linear gramicidin synthase subunit C. (1759 aa)    
Predicted Functional Partners:
PpsA_2
Beta-ketoacyl synthase.
 
 
0.978
EryA_2
Polyketide synthetase mbtC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.965
Pks2
Polyketide synthase pks5.
 
 0.962
MbtH_1
Protein mbtH.
 
 
 0.946
MbtH_2
Protein mbtH.
 
 
 0.946
PpsA_7
Polyketide synthase pks13.
 
 0.946
EryA_1
Acyl transferase domain-containing protein.
 
 0.940
RMCT_4707
Linear gramicidin synthetase subunit D.
 
 
0.926
MbtB_1
Phenyloxazoline synthase mbtB.
 
  
 0.871
PpsA_3
Beta-ketoacyl synthase.
 
 0.867
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.