STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKL40084.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
OKL40085.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.985
OKL40083.1
Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.870
OKL40080.1
L-fucose mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.862
OKL40082.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.731
OKL38768.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.730
OKL39903.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.692
OKL40081.1
Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.691
OKL40251.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.686
OKL41242.1
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.655
OKL38671.1
4,5-DOPA dioxygenase extradiol; Seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.644
Your Current Organism:
Pontibacter sp. S108
NCBI taxonomy Id: 1797110
Other names: P. sp. S10-8, Pontibacter sp. S10-8
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.